Wow, this thread filled up quick...
After looking a logo over for the best way to rebuild it, I block in my shapes and layer them. Though you can use a single layer (it has its own hierarchy), this can be cumbersome and aggravating to keep the shapes organised in a stacking order.
For the most part, you should use the layer gallery. This may answer what I think is your question of "filling" shapes... as long as they're closed paths. Then build from the bottom up placing one or a series of shapes (or stages of your drawing) onto its own layer.
Hope this helps.
Wayne
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